Rhino 6 - FilletEdge is rather buggy

Moment of Inspiration program (a.k.a. MoI, $279) makes perfect surface fillets (FilletEdge command) and perfect meshes. Exchanging NURBs and meshes between Rhino and Moment of Inspiration is easy.

Moment of Inspiration makes perfect variable radiused fillets:

Moment of Inspiration makes perfect meshes: