Error: _umath_linalg.cp39-win_amd64.pyd' is already loaded

Hi there,
I have a problem with installing python scipy. I successfully installed numpy and trimesh and when I tried to install scipy, I get the above mentioned error. I’m fairly new to coding, so any help would be appreciated.

This is the log file:

Info 3/13/2025 9:07:42 AM [RhinoCode] Storage Site Registered: Local Drive (mcneel.eto.file)
Info 3/13/2025 9:07:42 AM [RhinoCode] Storage Site Registered: Rhino Files (mcneel.rhinoFiles.file)
Info 3/13/2025 9:07:42 AM [RhinoCode] Storage Site Registered: Web (mcneel.console.http)
Info 3/13/2025 9:07:42 AM [RhinoCode] Rhino3D Initialized on Windows - NETCoreApp
Info 3/13/2025 9:07:42 AM [RhinoCode] Platform Registered: Rhinoceros 3D @ 8.16.25042.13001 (mcneel.rhino3d.rhino)
Info 3/13/2025 9:07:42 AM [RhinoCode] Storage Site Registered: Rhino3D Project (mcneel.rhino3d.project)
Info 3/13/2025 9:07:42 AM [RhinoCode] Operating System: Microsoft Windows NT 10.0.19045.0
Info 3/13/2025 9:07:42 AM [RhinoCode] RhinoCode server starting on \\.\pipe\rhinocode_remotepipe_18680
Info 3/13/2025 9:07:42 AM [RhinoCode] Language Registered: Plain Text 1.0 (rhinocode.builtin.text)
Info 3/13/2025 9:07:42 AM [RhinoCode] Language Registered: JSON 1.0 (rhinocode.builtin.json)
Info 3/13/2025 9:07:42 AM [RhinoCode] Language Registered: Yaml 1.0 (rhinocode.builtin.yaml)
Info 3/13/2025 9:07:42 AM [RhinoCode] Language Registered: Git DotFile 1.0 (rhinocode.builtin.gitDotFile)
Info 3/13/2025 9:07:42 AM [RhinoCode] Language Loader Registered: mcneel.pythonnet.python@3.*
Info 3/13/2025 9:07:42 AM [RhinoCode] Language Loader Registered: mcneel.ironpython.python@2.*
Info 3/13/2025 9:07:42 AM [RhinoCode] Language Loader Registered: mcneel.roslyn.csharp@9.*
Info 3/13/2025 9:07:42 AM [RhinoCode] Language Loader Registered: mcneel.gh1.grasshopper@1.*
Info 3/13/2025 9:07:42 AM [RhinoCode] Language Loader Registered: mcneel.markdig.markdown@0.*
Info 3/13/2025 9:07:42 AM [RhinoCode] Using existing runtime: CPython 3.9.10/43 (x64)
Info 3/13/2025 9:07:42 AM [RhinoCode] Initializing CPython 3.9.10/43 runtime
Info 3/13/2025 9:07:42 AM [RhinoCode] Deploying python packages
Info 3/13/2025 9:07:42 AM [RhinoCode] Deploying package from "site-interop.zip"
Info 3/13/2025 9:07:42 AM [RhinoCode] Deploying package from "utils.zip"
Info 3/13/2025 9:07:42 AM [RhinoCode] Deploying package from "pylint-2.10.2-py3-none-any.whl"
Info 3/13/2025 9:07:42 AM [RhinoCode] Deploying package from "pyflakes-2.4.0-py2.py3-none-any.whl"
Info 3/13/2025 9:07:42 AM [RhinoCode] Deploying package from "pycodestyle-2.8.0-py2.py3-none-any.whl"
Info 3/13/2025 9:07:42 AM [RhinoCode] Deploying package from "jedi-0.19.2-py2.py3-none-any.whl"
Info 3/13/2025 9:07:42 AM [RhinoCode] Deploying package from "black-21.8b0-py3-none-any.whl"
Info 3/13/2025 9:07:42 AM [RhinoCode] Deploying package from "certifi-2024.8.30-py3-none-any.whl"
Info 3/13/2025 9:07:42 AM [RhinoCode] Deploying package from "pywin32-302-cp39-cp39-win_amd64.whl"
Info 3/13/2025 9:07:42 AM [RhinoCode] Deploying package from "psutil-5.9.1-cp39-cp39-win_amd64.whl"
Info 3/13/2025 9:07:42 AM [RhinoCode] Saving CPython runtime configs
Info 3/13/2025 9:07:42 AM [RhinoCode] PYTHONHOME: \\?\C:\Users\Lukas\.rhinocode\py39-rh8
Info 3/13/2025 9:07:42 AM [RhinoCode] PYTHONPATH: 
Info 3/13/2025 9:07:42 AM [RhinoCode] Loading CPython engine from C:\Users\Lukas\.rhinocode\py39-rh8\McNeel.Python39.Runtime.dll
Info 3/13/2025 9:07:44 AM [RhinoCode] Preparing SSL context
Info 3/13/2025 9:07:44 AM [RhinoCode] Adding search path C:\Users\Lukas\.rhinocode\py39-rh8\lib\site-packages (from C:\Users\Lukas\.rhinocode\py39-rh8\lib\site-packages\distutils-precedence.pth)
Info 3/13/2025 9:07:44 AM [RhinoCode] Adding search path C:\Users\Lukas\.rhinocode\py39-rh8\site-support\win32 (from C:\Users\Lukas\.rhinocode\py39-rh8\site-support\pywin32.pth)
Info 3/13/2025 9:07:44 AM [RhinoCode] Adding search path C:\Users\Lukas\.rhinocode\py39-rh8\site-support\win32\lib (from C:\Users\Lukas\.rhinocode\py39-rh8\site-support\pywin32.pth)
Info 3/13/2025 9:07:44 AM [RhinoCode] Adding search path C:\Users\Lukas\.rhinocode\py39-rh8\site-support\Pythonwin (from C:\Users\Lukas\.rhinocode\py39-rh8\site-support\pywin32.pth)
Info 3/13/2025 9:07:44 AM [RhinoCode] Adding search path C:\Users\Lukas\.rhinocode\py39-rh8\site-support (from C:\Users\Lukas\.rhinocode\py39-rh8\site-support\pywin32.pth)
Info 3/13/2025 9:07:44 AM [RhinoCode] Running process: C:\Users\Lukas\.rhinocode\py39-rh8\python.exe -I -m pip --isolated --disable-pip-version-check list --path "C:\Users\Lukas\.rhinocode\py39-rh8\site-envs\default-9eRdRLPd" --format freeze
Info 3/13/2025 9:07:44 AM [RhinoCode] Running process: C:\Users\Lukas\.rhinocode\py39-rh8\python.exe -I -m pip --isolated --disable-pip-version-check list --format freeze
Info 3/13/2025 9:07:44 AM [RhinoCode] Running process: C:\Users\Lukas\.rhinocode\py39-rh8\python.exe -I -m pip --isolated --disable-pip-version-check list --path "C:\Users\Lukas\.rhinocode\py39-rh8\site-support" --format freeze
Info 3/13/2025 9:07:44 AM [RhinoCode] Parsing configs schema "https://files.mcneel.com/schemas/rhinocode/editor.schema.v1.json" in C:\Users\Lukas\.rhinocode\editor.json
Info 3/13/2025 9:07:44 AM [RhinoCode] Setting cpython locale to C
Warn 3/13/2025 9:07:44 AM [RhinoCode] updated cpython locale to 'C'
Info 3/13/2025 9:07:44 AM [RhinoCode] Building stubs for platform "Rhinoceros 3D @ 8.16.25042.13001 (mcneel.rhino3d.rhino)" references
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for RhinoCodePlatform.Rhino3D, Version=8.16.25042.13001
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Threading.Tasks.Parallel, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Windows.Forms, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Drawing.Primitives, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Drawing.Common, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for Eto, Version=2.8.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for Eto, Version=2.8.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for RhinoCommon, Version=8.16.25042.13001
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for Rhino.UI, Version=8.16.25042.13001
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for RhinoCodePlatform.Rhino3D, Version=8.16.25042.13001
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for Grasshopper, Version=8.16.25042.13001
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for GH_IO, Version=8.16.25042.13001
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Private.CoreLib, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Runtime, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Runtime.InteropServices, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Text.Encoding.CodePages, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Runtime.Loader, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Collections, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Collections.Concurrent, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Threading, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for mscorlib, Version=4.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for Microsoft.Win32.SystemEvents, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Diagnostics.TraceSource, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Drawing, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Drawing.Primitives, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Xaml, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.ComponentModel.Primitives, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Private.Uri, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Drawing.Common, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Runtime.Extensions, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Diagnostics.Debug, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Added Python 3.9.10 (mcneel.pythonnet.python) search path: C:\Users\Lukas\AppData\Roaming\McNeel\Rhinoceros\8.0\scripts
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Runtime.CompilerServices.VisualC, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for Microsoft.Win32.Primitives, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Collections.NonGeneric, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.ObjectModel, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Windows.Forms, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Threading.Thread, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Windows.Forms.Primitives, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Collections.Specialized, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Configuration.ConfigurationManager, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Diagnostics.Process, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Memory, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Xml.ReaderWriter, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Private.Xml, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Net.WebClient, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.ComponentModel.EventBasedAsync, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Text.Encoding.Extensions, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.ComponentModel.TypeConverter, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for Microsoft.Win32.Registry, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Linq, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Collections.Immutable, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.IO.FileSystem.Watcher, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Threading.Overlapped, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.ComponentModel, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Linq.Expressions, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.IO.Packaging, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Net.Requests, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Net.Primitives, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Net.WebHeaderCollection, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Threading.ThreadPool, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Windows.Extensions, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Core, Version=4.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Numerics.Vectors, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Resources.Extensions, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Text.RegularExpressions, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Runtime.Serialization, Version=4.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Reflection.Emit.Lightweight, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Runtime.Serialization.Xml, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Reflection.Emit.ILGeneration, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Private.DataContractSerialization, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Reflection.Primitives, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Diagnostics.StackTrace, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Reflection.Metadata, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Security.Cryptography, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Xml, Version=4.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Xml.XmlSerializer, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Runtime.Serialization.Primitives, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Runtime.Serialization.Formatters, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Numerics, Version=4.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Runtime.Numerics, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Data, Version=4.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Data.Common, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.IO.MemoryMappedFiles, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.IO.Pipes, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Security.AccessControl, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Security.Principal.Windows, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Security, Version=4.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Security.Cryptography.ProtectedData, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Diagnostics.FileVersionInfo, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Net.NetworkInformation, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Management, Version=4.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Net.Http, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.ServiceModel, Version=4.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.ServiceModel.Syndication, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Diagnostics.Tracing, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Net.WebProxy, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Diagnostics.DiagnosticSource, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Net.Security, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Net.ServicePoint, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Net.Quic, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Net.Sockets, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Net.NameResolution, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Security.Claims, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.ServiceModel.Primitives, Version=4.9.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Private.ServiceModel, Version=4.9.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Diagnostics.EventLog, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Reflection.Emit, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Web, Version=4.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Web.HttpUtility, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for Microsoft.Extensions.Logging.Abstractions, Version=6.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for Microsoft.Extensions.Logging, Version=6.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for Microsoft.Extensions.Options, Version=6.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.ValueTuple, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Windows.Controls.Ribbon, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Text.Json, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Text.Encodings.Web, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for Microsoft.CSharp, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Runtime.Intrinsics, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Resources.Writer, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Reflection.DispatchProxy, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for Microsoft.VisualBasic, Version=10.1.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for Microsoft.VisualBasic.Core, Version=12.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for Microsoft.Dynamic, Version=1.3.1.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Resources.ResourceManager, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for Microsoft.Scripting, Version=1.3.1.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Console, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Diagnostics.Tools, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for Microsoft.CodeAnalysis.CSharp, Version=4.6.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for Microsoft.CodeAnalysis, Version=4.6.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for Microsoft.CodeAnalysis.VisualBasic, Version=4.6.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Threading.Tasks.Parallel, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Starting python language server background process
Info 3/13/2025 9:07:44 AM [RhinoCode] Running background process: C:\Users\Lukas\.rhinocode\py39-rh8\python.exe utils\pyminilsp_server.py
Info 3/13/2025 9:07:44 AM [RhinoCode] Preparing python auto-completion cache
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.IO.FileSystem.DriveInfo, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Language Registered: Python 3.9.10 (mcneel.pythonnet.python)
Info 3/13/2025 9:07:44 AM [RhinoCode] Using existing runtime: IronPython 2.7.12/3 (x64)
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.CodeDom, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.IO.FileSystem, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Runtime.InteropServices.RuntimeInformation, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Security.Cryptography.Primitives, Version=7.0.0.0
Info 3/13/2025 9:07:44 AM [RhinoCode] Stubs already exist for System.Security.Cryptography.Algorithms, Version=7.0.0.0
Info 3/13/2025 9:07:45 AM [RhinoCode] Loading IronPython 2.7.12/3 runtime
Info 3/13/2025 9:07:45 AM [RhinoCode] Setting ironpython locale to C
Info 3/13/2025 9:07:45 AM [RhinoCode] Stubs already exist for System.Diagnostics.TextWriterTraceListener, Version=7.0.0.0
Info 3/13/2025 9:07:45 AM [RhinoCode] Stubs already exist for System.Diagnostics.PerformanceCounter, Version=7.0.0.0
Info 3/13/2025 9:07:45 AM [RhinoCode] Stubs already exist for System.Security.Permissions, Version=7.0.0.0
Info 3/13/2025 9:07:45 AM [RhinoCode] Stubs already exist for System.IO.Compression, Version=7.0.0.0
Info 3/13/2025 9:07:45 AM [RhinoCode] Stubs already exist for System.IO.Ports, Version=7.0.0.0
Info 3/13/2025 9:07:45 AM [RhinoCode] Stubs already exist for System.Net.WebSockets, Version=7.0.0.0
Info 3/13/2025 9:07:45 AM [RhinoCode] Stubs already exist for System.Net.HttpListener, Version=7.0.0.0
Info 3/13/2025 9:07:45 AM [RhinoCode] Stubs already exist for System.Net.Mail, Version=7.0.0.0
Info 3/13/2025 9:07:45 AM [RhinoCode] Stubs already exist for System.Net.Ping, Version=7.0.0.0
Info 3/13/2025 9:07:45 AM [RhinoCode] Stubs already exist for System.Net.WebSockets.Client, Version=7.0.0.0
Info 3/13/2025 9:07:45 AM [RhinoCode] Stubs already exist for System.Threading.AccessControl, Version=7.0.0.0
Warn 3/13/2025 9:07:45 AM [RhinoCode] updated ironpython locale to 'C'
Info 3/13/2025 9:07:45 AM [RhinoCode] Added IronPython 2.7.12 (mcneel.ironpython.python) search path: C:\Users\Lukas\AppData\Roaming\McNeel\Rhinoceros\8.0\scripts
Info 3/13/2025 9:07:45 AM [RhinoCode] Language Registered: IronPython 2.7.12 (mcneel.ironpython.python)
Info 3/13/2025 9:07:46 AM [RhinoCode] Stubs already exist for System.Xml.Linq, Version=4.0.0.0
Info 3/13/2025 9:07:46 AM [RhinoCode] Stubs already exist for System.Xml.XDocument, Version=7.0.0.0
Info 3/13/2025 9:07:46 AM [RhinoCode] Stubs already exist for System.Private.Xml.Linq, Version=7.0.0.0
Info 3/13/2025 9:07:46 AM [RhinoCode] Installing microsoft.netframework.referenceassemblies.net48.1.0.3.nupkg
Info 3/13/2025 9:07:46 AM [RhinoCode] Setting roslyn culture to 
Info 3/13/2025 9:07:46 AM [RhinoCode] Language Registered: C# 9.0 (mcneel.roslyn.csharp)
Info 3/13/2025 9:07:46 AM [RhinoCode] Language Registered: Grasshopper 1.0 (mcneel.gh1.grasshopper)
Info 3/13/2025 9:07:46 AM [RhinoCode] Language Registered: Markdown 0.30.4 (mcneel.markdig.markdown)
Info 3/13/2025 9:07:49 AM [RhinoCode] Stubs already exist for System.Threading.Tasks.Extensions, Version=7.0.0.0
Info 3/13/2025 9:07:49 AM [RhinoCode] Stubs already exist for Microsoft.Bcl.AsyncInterfaces, Version=7.0.0.0
Info 3/13/2025 9:07:49 AM [RhinoCode] Stubs already exist for System.Composition.AttributedModel, Version=7.0.0.0
Info 3/13/2025 9:07:49 AM [RhinoCode] Stubs already exist for Microsoft.CodeAnalysis.Workspaces, Version=4.6.0.0
Info 3/13/2025 9:07:49 AM [RhinoCode] Stubs already exist for Microsoft.CodeAnalysis.CSharp.Workspaces, Version=4.6.0.0
Info 3/13/2025 9:07:49 AM [RhinoCode] Stubs already exist for Microsoft.CodeAnalysis.VisualBasic.Workspaces, Version=4.6.0.0
Info 3/13/2025 9:07:49 AM [RhinoCode] Stubs already exist for Microsoft.CodeAnalysis.Features, Version=4.6.0.0
Info 3/13/2025 9:07:49 AM [RhinoCode] Stubs already exist for Microsoft.CodeAnalysis.CSharp.Features, Version=4.6.0.0
Info 3/13/2025 9:07:49 AM [RhinoCode] Stubs already exist for Microsoft.CodeAnalysis.VisualBasic.Features, Version=4.6.0.0
Info 3/13/2025 9:07:49 AM [RhinoCode] Stubs already exist for System.Composition.TypedParts, Version=7.0.0.0
Info 3/13/2025 9:07:49 AM [RhinoCode] Stubs already exist for System.Composition.Runtime, Version=7.0.0.0
Info 3/13/2025 9:07:49 AM [RhinoCode] Stubs already exist for System.Composition.Hosting, Version=7.0.0.0
Info 3/13/2025 9:07:49 AM [RhinoCode] Stubs already exist for Microsoft.DiaSymReader, Version=1.4.0.0
Info 3/13/2025 9:07:50 AM [RhinoCode] Stubs already exist for System.Runtime.CompilerServices.Unsafe, Version=7.0.0.0
Info 3/13/2025 9:07:51 AM [RhinoCode] Stubs already exist for System.Globalization, Version=7.0.0.0
Info 3/13/2025 9:09:30 AM [RhinoCode] Stored search paths: *.*.python@3.* @ C:\Users\Lukas\.rhinocode\python-3.pth
Info 3/13/2025 9:09:30 AM [RhinoCode] Stored search paths: *.*.python@2.* @ C:\Users\Lukas\.rhinocode\python-2.pth
Info 3/13/2025 9:09:43 AM [RhinoCode] Stubs already exist for System.ComponentModel.Composition, Version=4.0.0.0
Info 3/13/2025 9:10:33 AM [RhinoCode] Installing "numpy"
Info 3/13/2025 9:10:33 AM [RhinoCode] Running process: C:\Users\Lukas\.rhinocode\py39-rh8\python.exe -I -m pip --isolated --disable-pip-version-check install --target "C:\Users\Lukas\.rhinocode\py39-rh8\site-envs\default-9eRdRLPd" --progress-bar off --upgrade --no-warn-script-location --retries 5 --timeout 15 "numpy"
Info 3/13/2025 9:10:44 AM [RhinoCode] Running process: C:\Users\Lukas\.rhinocode\py39-rh8\python.exe -I -m pip --isolated --disable-pip-version-check list --path "C:\Users\Lukas\.rhinocode\py39-rh8\site-envs\default-9eRdRLPd" --format freeze
Info 3/13/2025 9:10:45 AM [RhinoCode] Collecting numpy
  Using cached numpy-2.0.2-cp39-cp39-win_amd64.whl.metadata (59 kB)
Using cached numpy-2.0.2-cp39-cp39-win_amd64.whl (15.9 MB)
Installing collected packages: numpy
Successfully installed numpy-2.0.2

Info 3/13/2025 9:11:01 AM [RhinoCode] Installing "trimesh"
Info 3/13/2025 9:11:01 AM [RhinoCode] Running process: C:\Users\Lukas\.rhinocode\py39-rh8\python.exe -I -m pip --isolated --disable-pip-version-check install --target "C:\Users\Lukas\.rhinocode\py39-rh8\site-envs\default-9eRdRLPd" --progress-bar off --upgrade --no-warn-script-location --retries 5 --timeout 15 "trimesh"
Info 3/13/2025 9:11:14 AM [RhinoCode] Running process: C:\Users\Lukas\.rhinocode\py39-rh8\python.exe -I -m pip --isolated --disable-pip-version-check list --path "C:\Users\Lukas\.rhinocode\py39-rh8\site-envs\default-9eRdRLPd" --format freeze
Info 3/13/2025 9:11:15 AM [RhinoCode] Collecting trimesh
  Using cached trimesh-4.6.4-py3-none-any.whl.metadata (18 kB)
Collecting numpy>=1.20 (from trimesh)
  Using cached numpy-2.0.2-cp39-cp39-win_amd64.whl.metadata (59 kB)
Using cached trimesh-4.6.4-py3-none-any.whl (708 kB)
Using cached numpy-2.0.2-cp39-cp39-win_amd64.whl (15.9 MB)
Installing collected packages: numpy, trimesh
Successfully installed numpy-2.0.2 trimesh-4.6.4

Error 3/13/2025 9:13:00 AM [RhinoCode] Error executing code | Traceback (most recent call last):
  File "file:///C:/Users/Lukas/.rhinocode/stage/c0lh35sl.zim", line 4, in <module>
ModuleNotFoundError: No module named 'scipy'
Info 3/13/2025 9:13:16 AM [RhinoCode] Installing "scipy"
Info 3/13/2025 9:13:16 AM [RhinoCode] Running process: C:\Users\Lukas\.rhinocode\py39-rh8\python.exe -I -m pip --isolated --disable-pip-version-check install --target "C:\Users\Lukas\.rhinocode\py39-rh8\site-envs\default-9eRdRLPd" --progress-bar off --upgrade --no-warn-script-location --retries 5 --timeout 15 "scipy"
Error 3/13/2025 9:13:46 AM [RhinoCode] Process exited with code 2
Error 3/13/2025 9:13:46 AM [RhinoCode] pip install error | Collecting scipy
  Using cached scipy-1.13.1-cp39-cp39-win_amd64.whl.metadata (60 kB)
Collecting numpy<2.3,>=1.22.4 (from scipy)
  Using cached numpy-2.0.2-cp39-cp39-win_amd64.whl.metadata (59 kB)
Using cached scipy-1.13.1-cp39-cp39-win_amd64.whl (46.2 MB)
Using cached numpy-2.0.2-cp39-cp39-win_amd64.whl (15.9 MB)
Installing collected packages: numpy, scipy
Successfully installed numpy-2.0.2 scipy-1.13.1

ERROR: Exception:
Traceback (most recent call last):
  File "C:\Users\Lukas\.rhinocode\py39-rh8\lib\site-packages\pip\_internal\cli\base_command.py", line 106, in _run_wrapper
    status = _inner_run()
  File "C:\Users\Lukas\.rhinocode\py39-rh8\lib\site-packages\pip\_internal\cli\base_command.py", line 97, in _inner_run
    return self.run(options, args)
  File "C:\Users\Lukas\.rhinocode\py39-rh8\lib\site-packages\pip\_internal\cli\req_command.py", line 67, in wrapper
    return func(self, options, args)
  File "C:\Users\Lukas\.rhinocode\py39-rh8\lib\site-packages\pip\_internal\commands\install.py", line 520, in run
    self._handle_target_dir(
  File "C:\Users\Lukas\.rhinocode\py39-rh8\lib\site-packages\pip\_internal\commands\install.py", line 575, in _handle_target_dir
    shutil.rmtree(target_item_dir)
  File "C:\Users\Lukas\.rhinocode\py39-rh8\lib\shutil.py", line 749, in rmtree
    return _rmtree_unsafe(path, onerror)
  File "C:\Users\Lukas\.rhinocode\py39-rh8\lib\shutil.py", line 622, in _rmtree_unsafe
    _rmtree_unsafe(fullname, onerror)
  File "C:\Users\Lukas\.rhinocode\py39-rh8\lib\shutil.py", line 627, in _rmtree_unsafe
    onerror(os.unlink, fullname, sys.exc_info())
  File "C:\Users\Lukas\.rhinocode\py39-rh8\lib\shutil.py", line 625, in _rmtree_unsafe
    os.unlink(fullname)
PermissionError: [WinError 5] Zugriff verweigert: 'C:\\Users\\Lukas\\.rhinocode\\py39-rh8\\site-envs\\default-9eRdRLPd\\numpy\\linalg\\_umath_linalg.cp39-win_amd64.pyd'


Error 3/13/2025 9:13:46 AM [RhinoCode] Error installing package | Rhino.Runtime.Code.Environments.EnvironException: Access Denied: _umath_linalg.cp39-win_amd64 is already loaded
   at Rhino.Runtime.Code.Languages.PythonNet.CPythonEnviron.AddPackages(IEnumerable`1 pkgSpecs, IProgress`1 progress)
   at Rhino.Runtime.Code.Environments.Environ`1.Rhino.Runtime.Code.Environments.IPackageEnviron.AddPackages(IEnumerable`1 pkgSpecs, IProgress`1 progress)
   at RhinoCodeEditor.Editor.Dialogs.InstallPackageDialog.<>c__DisplayClass16_0.<InstallPackages>b__0()

Notice this error line. Numpy and other python packages that use python’s c api, load their own .dll files into Rhino memory when they get loaded. So when installing scipy later, the package installer wants to update the numpy package that scipy depends on and it fails deleting files that are already loaded in memory.

In cases like this, Restart Rhino (it should clear the bad package environment) and install the packages again.

If this did not work out you can completely reset the python 3 runtime

I have tried your mentioned solutions but somehow even with a reset and just installing the scipy lead to that error.