Sorry, I have to take that back, adding an input on Entwine also removes the naming of each input.
The only difference seems to be that Entwine doesn’t add a new input when you connect a component to the last free input on Entwine. So the issue in both cases is that when you add a new input, whether manually or automatically, it resets all the input names. This also cannot be undone by control+z.
