I can’t duplicate again either. All works fine after a restart. It may of been a 10.10.4 beta issue.
These days I just start Atom listener in Rhino, then start Atom from Terminal after I cd to my scripts folder. Like you mentioned a while ago in another post.
I have tried Alfred, just never got in the habit of using it, so I don’t have it anymore.
i think something weird or a bigger type of change may have happened in one of the Atom updates lately… i was having a few problems with Atom/rhino communications after updating to a new version of Atom but i didn’t have the time/energy to fiddle with it and used the laptop instead… since then, the problem computer was rebooted and everything worked ok again.